PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.086320.3
Common NameCsa_1G065960, LOC101208894
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 182aa    MW: 20432.4 Da    PI: 10.355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.086320.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-102671654
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       E+ RRd++N++f eL ++l +    + +K +K++iL  Av+ I +L
  Cucsa.086320.3 26 ARKEKIRRDKLNDRFLELNSILNHG---RPPKIDKSAILGDAVRMIIQL 71
                    568*********************8...89****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3952071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-72376No hitNo description
PfamPF000102.8E-82571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-62677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-122794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-112893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEEDVKESRS RKRMSSGSSN AFESKARKEK IRRDKLNDRF LELNSILNHG RPPKIDKSAI  60
LGDAVRMIIQ LRDEAQKLKE SNESSLEKIN EMKAEKNELR DEKQRLKEAK DSLEKKMKGF  120
NTQPTFLPHP PAIPAGFSSP NQIVGGKLVP VIGYPGVSMW QFMPPGAIDT SQDHVLRPPV  180
A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633RKEKIRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-136LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-136LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145091.11e-128PREDICTED: transcription factor ILR3-like
SwissprotQ9FH371e-73ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0A0LX711e-128A0A0A0LX71_CUCSA; Uncharacterized protein
STRINGPOPTR_0011s03360.12e-85(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-71bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]